Anatomy Ontologies for Bioinformatics: Principles and by Albert Burger, Duncan Davidson, Richard Baldock

By Albert Burger, Duncan Davidson, Richard Baldock

This e-book presents a well timed and first-of-its-kind number of papers on anatomy ontologies. it really is interdisciplinary in its technique, bringing jointly the proper services from computing and biomedical stories. The publication goals to supply readers with a complete realizing of the rules of anatomical ontologies and the-state-of-the-art by way of current instruments and purposes. It additionally highlights demanding situations that stay this day.

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Weems, Y. Wu, I. Xu, D. Yoo, J. Yoon, and P. Zhang. The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community. Nucleic Acids Res, 31:224–228, 2003. 42 Katica Ilic, Seung Y. Rhee, Elizabeth A. Kellogg and Peter F. Stevens 21. C. Rosse, A. L. L. T. Detwiler, and B. Smith. A strategy for improving and integrating biomedical ontologies. , pages 639–643, 2005. 22. B. Smith, W. Ceusters, B. Klagges, J.

J. Lawrence, Q. L. E. Seigfried, and V. Brendel. MaizeGDB, the community database for maize genetics and genomics. Nucleic Acids Res, 32:D393–397, 2004. 17. C. Mungall. Obol: Integrating language and meaning in bio-ontologies. Comp Funct Genom, 5:509–520, 2004. 18. Plant Ontology Consortium. The Plant Ontology Consortium and Plant Ontologies. Comp Funct Genom, 3:137–142, 2002. 19. A. Pujar, P. A. Kellogg, K. Ilic, L. Vincent, S. Avraham, P. Stevens, F. Zapata, L. Y. M. Sachs, M. Schaeffer, L. Stein, D.

Nevertheless, if the general curation, provision and availability of these ontologies together with tools for handling them are not much improved, the wider community is not going to get the benefit of all that the curatorial community has done. Acknowledgements I thank Stuart Aitken for commenting on the draft manuscript and those curators of anatomical databases who have provided me with up-to-date information. 2. The anatomy ontologies of the main fungal and animal model organisms. 1 Upwards propagation means that information associated with a lower-level tissue is associated with higher level tissue linked through a part of relationship - this is the key property need to handle gene expression data.

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